ID Class Order Superfamily Length Start End Strand View
A01_LTR-Ngaro_1 RetrotransposonsLTRLTR-Ngaro26626759702676235-
A01_LTR-Ngaro_2 RetrotransposonsLTRLTR-Ngaro1462341702923417174+
A02_LTR-Ngaro_3 RetrotransposonsLTRLTR-Ngaro1021972443119724532+
A03_LTR-Ngaro_4 RetrotransposonsLTRLTR-Ngaro145530985531129-
A03_LTR-Ngaro_5 RetrotransposonsLTRLTR-Ngaro911800955318009643-
A03_LTR-Ngaro_6 RetrotransposonsLTRLTR-Ngaro2811907321019073490-
A04_LTR-Ngaro_7 RetrotransposonsLTRLTR-Ngaro9831446013144698+
A04_LTR-Ngaro_8 RetrotransposonsLTRLTR-Ngaro841358090813580991-
A04_LTR-Ngaro_9 RetrotransposonsLTRLTR-Ngaro871382542213825508-
A05_LTR-Ngaro_10 RetrotransposonsLTRLTR-Ngaro10424683492468452+
A05_LTR-Ngaro_11 RetrotransposonsLTRLTR-Ngaro2202125082321251042+
A06_LTR-Ngaro_12 RetrotransposonsLTRLTR-Ngaro1032756869227568794-
A07_LTR-Ngaro_13 RetrotransposonsLTRLTR-Ngaro1562571874325718898+
A08_LTR-Ngaro_14 RetrotransposonsLTRLTR-Ngaro184692882693065+
A08_LTR-Ngaro_15 RetrotransposonsLTRLTR-Ngaro10954491265449234+
A08_LTR-Ngaro_16 RetrotransposonsLTRLTR-Ngaro2351379270113792935-
A08_LTR-Ngaro_17 RetrotransposonsLTRLTR-Ngaro1551812188018122034+
A08_LTR-Ngaro_18 RetrotransposonsLTRLTR-Ngaro2171841103818411254-
A08_LTR-Ngaro_19 RetrotransposonsLTRLTR-Ngaro862172702021727105-
A09_LTR-Ngaro_20 RetrotransposonsLTRLTR-Ngaro9516052211605315+

< 1 2 > Total 2


Brassica rapa (Chiifu_V3.0)

ID:

A01_LTR-Ngaro_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

266

Start:

2675970  

End:

2676235

Strand:

-

>A01_LTR-Ngaro_1

TGTGGCTGCTGTTGCTGCTGCTGCTGCTGTGGTGTTGGCTGTTGCTGGTGTTGAGGCGCTGCCTGCTGCTGTTGTTGCTGCTGTTGAGAAGTTGGTTGGTTTTGATGTTGTTGTTGTTGTTGGTGTTGCTGCTGCTGTTGTTGATGATGTTGCTGTTGTTGTTGCTGCTGTTGCTGTTGTTGCTGTGCACGTTGCATCAAGAGTTGTTGCATTTGTATTTGCTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGTGAGACCTGTGG

Brassica rapa (Chiifu_V3.0)

ID:

A01_LTR-Ngaro_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

146

Start:

23417029  

End:

23417174

Strand:

+

>A01_LTR-Ngaro_2

ACAATCTCCACCACAAGGCAACAATAACAACAACAACAACAATGGTGGAAACAATGACAACAACAACAACAACAATAACAATGGTGGAGGAAGCAACAATGGTAATAACAACAACAATGGGAATAATAACAACAATAATGGCAACA

Brassica rapa (Chiifu_V3.0)

ID:

A02_LTR-Ngaro_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

102

Start:

19724431  

End:

19724532

Strand:

+

>A02_LTR-Ngaro_3

TATTTATATGATATATAAATATATATTTATATTTATATATGTACCCATGCTCTATTCATATACATAAATTATAAGTTTAGCCGTTTCTCATCCCCGCTCCAT

Brassica rapa (Chiifu_V3.0)

ID:

A03_LTR-Ngaro_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

145

Start:

530985  

End:

531129

Strand:

-

>A03_LTR-Ngaro_4

AGTTGTTGTAGTAGGAGCAGATGTATCTATCATTGTAGTATCTGTAGATGTAGTATCTGTAGATGTAGTAGGAGCAGACGTAGTAGTAGTAGTGGTAAGCAGAGGAGGAGTAGATGAAGTAGCTGTGGGCGCAGAGGTAGATGAT

Brassica rapa (Chiifu_V3.0)

ID:

A03_LTR-Ngaro_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

91

Start:

18009553  

End:

18009643

Strand:

-

>A03_LTR-Ngaro_5

ATGTACACATGTGAAGATGTACACGTGTACACACATAGTCTATGTCCACATGTAAACTTGTACGCATATACACATACACATACTTACATGT

Brassica rapa (Chiifu_V3.0)

ID:

A03_LTR-Ngaro_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

281

Start:

19073210  

End:

19073490

Strand:

-

>A03_LTR-Ngaro_6

GCTGTTGTTTCCGTTGTTATTATTCCCATTGTTGTTATTACCATTGTTGCCATTATTGCTGTTATTTCCATTGTTTCCATTATTGTTGTTATTACCATTGTTGTTGTTATCATTGTTTCCACCATTGTTTGTGTTGCCATTGTTGTTGTTGTCATTGTTTCCACCATTGTTGTTATTACCATTGTTGTTGTTGTCATTGTTTCCACCATTGTTATTGTTGTTGTTGTTGTTGTTTTCTTGTTGTGGCGAAGGTGGAGGTTGTGAGTCTGAAGAAGGAGGTG

Brassica rapa (Chiifu_V3.0)

ID:

A04_LTR-Ngaro_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

98

Start:

3144601  

End:

3144698

Strand:

+

>A04_LTR-Ngaro_7

CTTCGAAGCCTTATCACGAATTTAATAACCACACGTATATATGTAAATATATATATATATATATTTTTTTTTATGTAACCACGTATATATATATACAT

Brassica rapa (Chiifu_V3.0)

ID:

A04_LTR-Ngaro_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

84

Start:

13580908  

End:

13580991

Strand:

-

>A04_LTR-Ngaro_8

ACATGCCCTTACGTAACACACGCACGTATATCAGCCACACTCATACGCGCGCACGCGCTCACACACACATATATATATATATAC

Brassica rapa (Chiifu_V3.0)

ID:

A04_LTR-Ngaro_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

87

Start:

13825422  

End:

13825508

Strand:

-

>A04_LTR-Ngaro_9

GGAGGAGTAATAGACAGCAATAGCAAGTATATCATGCAAATGTATAAAAACCATATATATATATATATATATATATATATATATATA

Brassica rapa (Chiifu_V3.0)

ID:

A05_LTR-Ngaro_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

104

Start:

2468349  

End:

2468452

Strand:

+

>A05_LTR-Ngaro_10

GCTACTTCCTCTGCTCCAGCATTTGGTTTTACTACCTCCACTTCTGCTGCTGCAACTACTGCTTTTGCTGTACCCCAGATAGCATCAACTACTGCTACTACAAC

Brassica rapa (Chiifu_V3.0)

ID:

A05_LTR-Ngaro_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

220

Start:

21250823  

End:

21251042

Strand:

+

>A05_LTR-Ngaro_11

AAACAATGATAACAACAACAACAATGGTAATAACAACAATGACAACAACAACAATGGCGGAAACAATGACAACAACAACAGCAATGGTAATAACAACAATGATGGCAATAATGGTAACAAAAACAATGGCAATAACAACAACAATGGTAATAACAACAAGGGGAATAACAATGACAACAACAACAACAATGGGAATAATAATAACAACAAAAACAATAAC

Brassica rapa (Chiifu_V3.0)

ID:

A06_LTR-Ngaro_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

103

Start:

27568692  

End:

27568794

Strand:

-

>A06_LTR-Ngaro_12

TGCAAATGTTGTTGCTGCTGAAGATAGAGATGATACTGTTCCTGTTGTTGTTGCCATTGTTGCTGCTGTTGAAACCACTCTTGTTGTTGTTGTTGCTGGTATT

Brassica rapa (Chiifu_V3.0)

ID:

A07_LTR-Ngaro_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

156

Start:

25718743  

End:

25718898

Strand:

+

>A07_LTR-Ngaro_13

CAACAGCAACTCCAGCAGCAGCAACAACCCCAACAACAACAGTTCCAGCAGCAACCACAGTTACAGCAGCTAGCTCAGTCTCAGCAGCAGCAGCAGCAGCAGCTACAACAACATGAGCTGCCACAACAACAGCAGCAGCAACAGTCAACAGCATCC

Brassica rapa (Chiifu_V3.0)

ID:

A08_LTR-Ngaro_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

184

Start:

692882  

End:

693065

Strand:

+

>A08_LTR-Ngaro_14

CATCTATTCCTCCAGCAACAACAGCCACAACAGTTTCATCATCCACAGCAACAACAAACCCAACAGCAGTTCCAGCCACAACAACAGCAACAAGAGATGCAGTTCCAGCAATTCCAACAACAACAACAGTTCATTCAACAGCAGCAGTTCCATCACCAGCAGCACCGTCTGCTACATTCTCCTC

Brassica rapa (Chiifu_V3.0)

ID:

A08_LTR-Ngaro_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

109

Start:

5449126  

End:

5449234

Strand:

+

>A08_LTR-Ngaro_15

GACCGCCGCCGGACCACCGCCAGACCGTCGCCTCTTCGCCTTGTCGCCACTGGATGTTAAGAACTATTAAATATATATATATATATATATATAGTTATATAGTTATATA

Brassica rapa (Chiifu_V3.0)

ID:

A08_LTR-Ngaro_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

235

Start:

13792701  

End:

13792935

Strand:

-

>A08_LTR-Ngaro_16

TGTGGCAGCTGCTGAGGTGCTGACTGCTGTTGGTGTTGAGGCGCTGGCTGTGGCTGTTGCTGTTGTTGAGAAGGTGGTTGGTTTTGATGTTGCTGCTGTTGTTGCTGGTTATGTTGTTGCTGCTGCTGTTGTTGTGCACGTTGCAATAAGAGTTGTTGCATTTGTATTTGCTGCTGTTGTTGTTGCTGCTGCTGCTGTGAGATCTGTGGGTGTTGAGATTGCTGCAATTGCTGTT

Brassica rapa (Chiifu_V3.0)

ID:

A08_LTR-Ngaro_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

155

Start:

18121880  

End:

18122034

Strand:

+

>A08_LTR-Ngaro_17

CAATTGCAGCAGCAGCAGCAACAAAAGATTCAGTTGCAACATCAGCAGCAACAGAAGATTCAGCTGCAACAGCAGCAGAAGATTCAGCTACAACAACGTCAACTAGAACAAGAGTACCAATTACAACAGAAGCTCTTACAGGAGCAACAACAGTC

Brassica rapa (Chiifu_V3.0)

ID:

A08_LTR-Ngaro_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

217

Start:

18411038  

End:

18411254

Strand:

-

>A08_LTR-Ngaro_18

TGCTGCTGCTGCTGATGTTGTTGAAGCTGTGACAGCTGATGCTGCTGTTGATGTTGCTGCTGATGATGTTGGAGTTGTGACAATTGATGTTGCTGCTGCTGGAGTTGTGGCAGCTGTTGGTGTTGTTGTTGCTGCTGGATCTGCTGTTGTTGCTGCTGCTGATGGATCTGTTGTTGCTGCTGTTGTTGTTGTTGCTGCTGGTGCTGTTGCTGTTGCT

Brassica rapa (Chiifu_V3.0)

ID:

A08_LTR-Ngaro_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

86

Start:

21727020  

End:

21727105

Strand:

-

>A08_LTR-Ngaro_19

AAATTAAAACAAAAAAGCTCCGTTACCGGGAATCGAACCCGGGTCTCCTGGGTGAAAGCCAGATATCCTAACCGCTGGACGATAAC

Brassica rapa (Chiifu_V3.0)

ID:

A09_LTR-Ngaro_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

95

Start:

1605221  

End:

1605315

Strand:

+

>A09_LTR-Ngaro_20

TATGGTCTAGTGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATCTCGGTAGGACCTTATTTTATTGTTTTTCTTTAGTTAGGAC