ID Class Order Superfamily Length Start End Strand View
A01_LTR-Gypsy_1 RetrotransposonsLTRLTR-Gypsy12515219301522054-
A01_LTR-Gypsy_2 RetrotransposonsLTRLTR-Gypsy47715230511523527-
A01_LTR-Gypsy_3 RetrotransposonsLTRLTR-Gypsy12723258192325945-
A01_LTR-Gypsy_4 RetrotransposonsLTRLTR-Gypsy62123271012327721-
A01_LTR-Gypsy_5 RetrotransposonsLTRLTR-Gypsy13630659333066068+
A01_LTR-Gypsy_6 RetrotransposonsLTRLTR-Gypsy9637996163799711-
A01_LTR-Gypsy_7 RetrotransposonsLTRLTR-Gypsy61138005373801147-
A01_LTR-Gypsy_8 RetrotransposonsLTRLTR-Gypsy92145688734569793-
A01_LTR-Gypsy_9 RetrotransposonsLTRLTR-Gypsy9660393346039429-
A01_LTR-Gypsy_10 RetrotransposonsLTRLTR-Gypsy8760412316041317-
A01_LTR-Gypsy_11 RetrotransposonsLTRLTR-Gypsy68075378877538566+
A01_LTR-Gypsy_12 RetrotransposonsLTRLTR-Gypsy10085207148520813+
A01_LTR-Gypsy_13 RetrotransposonsLTRLTR-Gypsy34187366368736976-
A01_LTR-Gypsy_14 RetrotransposonsLTRLTR-Gypsy71987384088739126-
A01_LTR-Gypsy_15 RetrotransposonsLTRLTR-Gypsy851047210210472186-
A01_LTR-Gypsy_16 RetrotransposonsLTRLTR-Gypsy851048940410489488-
A01_LTR-Gypsy_17 RetrotransposonsLTRLTR-Gypsy9431049042610491368-
A01_LTR-Gypsy_18 RetrotransposonsLTRLTR-Gypsy851118025511180339-
A01_LTR-Gypsy_19 RetrotransposonsLTRLTR-Gypsy9431118127711182219-
A01_LTR-Gypsy_20 RetrotransposonsLTRLTR-Gypsy3451194299311943337-

< 1 2 3 4 5 > Total 2534


Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

125

Start:

1521930  

End:

1522054

Strand:

-

>A01_LTR-Gypsy_1

GGAATAAAATGAGACATTTTGGAAAATCGATCCACCACCACAAAAATAGAGTCATTACCCCGTTGAGTACGCGGAAGTCCTAACACAAAATCCATACTTATATCCGTCCACGGCTGAGTAGGTGT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

477

Start:

1523051  

End:

1523527

Strand:

-

>A01_LTR-Gypsy_2

GATCACATATCCTAAGAACAATACATGGTCTGTACCAAATTGACACTTCTGCTTGGCGGCGAATAGTCTTTCTTTGCGTAGGACGCTCAACACTTCACGGATGTGGCCTAGGTGGTCGTCCAAGGAAGAGCTAAATATAAGAATATCATCAAAATAGACCACCACAAATTTTCCAATGAAAGGACGAAGTGCTTGATTCATAACTCGCATGAATGTGCTCGGTGCGTTAGACAATCCAAAGGGCATAACGAGCCATTCAAATAAACCTTCCCGAGTTTTGAAAGCTGTCTTCCACTCATCACCAGGACGAATTCGAATCTGGTGATAACCACTCTTAAGATCAATTTTGGAGAAGATGGTTGCAGTGCCAATTTGATCTAGTAGATCATCGAGGCGTGGAATAGGAAAACGATAACGCACTGTTATTTTATTAATAGCACGACTATCGACACACATTCGCCAAGATCCATCTTTCTT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

127

Start:

2325819  

End:

2325945

Strand:

-

>A01_LTR-Gypsy_3

TTGTCCATCCGTCTGTGGGTGGTACCGGTGCTAAGGCTGAACCTTGGTTCCAATGCTCTTTGAAACGCCTGCCAAAAAGTTGAGGTAAACTTCGGGTCCCGGTCAGATACTATGCTTACGGTACCCC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

621

Start:

2327101  

End:

2327721

Strand:

-

>A01_LTR-Gypsy_4

CCAGGAAACTTCTACTTCTGGTGCGTTCTTGGTGTGGCCATTTTGTGATTGGGTGATCTTCTCGGGTCCACCGCTTCCCTGCCTCGGAAGATACATGCCTAGGAACCCAATCTTACGTTGCCAGAACTACACTTGCTAAGCTTAGCATATAACCCCTGCTCCCTTAACTTGTCCACACATACTCAAATGGCGTTGTGGTCCTCCGGCTCTTGGAGTAAATTAAGATATCGTCGATGAAGACAATCACACACTGTCCAGATAATCTCTGAAAATATCATTCATTAGCCCCATGAAAGCTGCCGGCGCTTCGTCAGCCAAAGGGCATTACTACGAATTCGTAGTGTCCGTACCGGGTACGAAAAGCCGTCTTCCTAATATCCCCTTCGTGAATAGGATTTGGTGATAACCCAAGCAAGGTCGATCTTTGGAACCAGTGGCCCCCTCCAGCTGATCCATAAGTTCGTCTATACGGGGTAGGGGGTACTTATTTTTAACGGTCACCTTGTTTAATCCCCGTAGTCGATGCACAGTCAGGCTCCCATCCTTCTTCTTTACAAAGAGCACGGGCGCCCCCAAGGCGAGCTACTCGGACGTATGAATCCCTTTTCCACTAGTTCTTCC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

136

Start:

3065933  

End:

3066068

Strand:

+

>A01_LTR-Gypsy_5

GGATATTATGAGTTCTTAGTGATACCATTTGGGTCGACAAAGGCACCGTTGCATTCATGAAGATATGAATGACGTTTTCGTGAACATTTGGATAGGTGTGCGATTGTATTCATCAACGACATCCTGAACTATTTTG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

96

Start:

3799616  

End:

3799711

Strand:

-

>A01_LTR-Gypsy_6

AGGAATAAAATGCACCATCTTGGAGAAACGATCCACCACGACAAAGATTGAATCATTGCCACGTTGTGTTCGTGGAAGACCAAGGACGAAATCCAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

611

Start:

3800537  

End:

3801147

Strand:

-

>A01_LTR-Gypsy_7

GCTGAAATTATGCACGAACCGACGATAAAAAGACGCCAAGCCATGAAAGCTTCACACCTCTGTGATTATTGTTGGAGTCGGCCAAGATGCGACTGCGGCTACTTTCTGTGGGTCTACACGTAGGCCTGCGACTGAGCAACATATCCGAGAAACAAGATCTGCGATGCACCAAAGTCGCATTTATGTTTTGCAACATAAAGTTTCTCAAGTCGCAGAGCGTGTAACATGTCTCGAATGTGCTCCAGATGGTCTGGTAGCGATGTACTGAAGATTAGGATGTCATCAAAATAGATAACTACAAACCGTCCAATAAACGGACGAAGAGCTTGATTCATGACGCGCATAAACGTGCTAGGAGAATTAGATAATCCAAAAGGCATCACTAACCACTCAAACAAACCTTCGCGCGTCTTGAAAGATGTTTTCCACTCATCACCCGGTCGTATACGAATTTGATGATAGCCACTTTTAAGGTCTAACTTCGTAAATATAGATGCTTTTCCGATTTGATCCAGGAGGTCATCGAGTCATGGAACCGGAAATCAGTATCGCGTTGTGATCTTGTTTATTGCACGACTATCCACACACATACGCCAAGCTTTATCTTTCTT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

921

Start:

4568873  

End:

4569793

Strand:

-

>A01_LTR-Gypsy_8

AAAACTGCACCTAGGCCATAACCTGAAGCATCAGATTCCACAATGAACATCTGATTGAAGTCTGGAAGCGCCAAGACTGGTGTAGTAGTCATTGCTATCTTCAATTCCTCAAAAGCAGTTTGAGCTACTTGCGACCAGATAAATAGCTCTTGCTTCAGCAATTCTGTTAAAGGCCTTGCAAGCATCCCATAGCTCTGCACGAAGCGCCTATAGTATCCAGTCAAGCCGAGAAACCCCCTCACATCCTTCACAGTTCTCGGTACTGGCCAGTTGACAACTGATTCTATCTTCTTTGGATCAGTGGAAACGCCCTTTGCGGAAATAATATGGCCCAAGTACTCCACTTGATGTTGACCAAACGCACACTTCTTTCTGTTAGCAAAAAGTTTATGTTCCTCAAAGACTCGAAAAACCGCTGCCACATGCTCCAAATGTTCCTCCATAGATGAACTAAAGATCAGTATATCATCAAAAAATACCAGCACAAATTTTCTCAAAATTTTCTGGAACACTTCGTTCATGAGAGATTGGAAGGTTGCTGGTGCATTCATCAAGCCAAAAGGCATTACCAAGAATTCATAGTGGCCTTCATGAGTTCTGAATGCTGTCTTCTCTACATCCTCTTCCTTCATACGTATTTGATGATAACCAGATCTTAAGTCTAATTTGGTGAAGTATTTAGCCCCATTGAGTTCGTCAAGTAACTGATCAATCATGGGAATAGGATATTTATCCGGTATTGTAGCTCTGTTCAACATCCTATAATCCACACAGAATCGCCACGTCTTATCTTTCTTCTTCACCAACAGTACTGGACTTGAGTAAGGACTGTGGCTTGGCCTGATAATTCCCGTCGCTAACATCTCCACTACGCTCTTTTCCATAACCTCTTTGTGTACCTGCGGATAACGGTAGGGTCTT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

96

Start:

6039334  

End:

6039429

Strand:

-

>A01_LTR-Gypsy_9

TTCAACCCATTTGGTGAAGTAGTCAGTGAGGACCAGGATGAACTTCTTTTGTCGAGATGCCGGCATTGGACCAATGATGTCCATTCCCCATCTCAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

87

Start:

6041231  

End:

6041317

Strand:

-

>A01_LTR-Gypsy_10

CGCTGGTAGGTCGCACCGGCGTTCTTTAGCCCGAAGGGCATCACCTTGTAGCAATAAGTCCCTCTGTCGGTGATGAATGCCGTCTTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

680

Start:

7537887  

End:

7538566

Strand:

+

>A01_LTR-Gypsy_11

ATCATCCAAGAGAGCAACAGCCCGTTCTCTAGTCCCGTCTTGTTGGTACGCAAGAAGGACGGTAGTTGGAGATTCTGTGTCGACTACAGGGCACTGAATAAAGCAACGGTAGCGGACAAGTACCCGATTCCCATGATAGATCAGTTGCTCGACGAGTTGCAAGGAGCAAAGGTTTTCTCTAAACTGGACTTAAGAGCGGGGTATCATCAAATACGTGTGCGCAGTGAGGATGTGCCAAAGACGGCTTTCAGAACATATGATGGGCATTATGAGTTCCTTGTCATGCCTTTTGGGTTGACAAACGCACCGGCGACCTTCCAAGCGCTGATGAATGAAGTCTTCAGGCCTTACCTAAGGAAGTTCGTACTGGTGTTCTTCGACGACATACTCGTTTACAGTCAGAACGAAGAAGAGCATCACCACCATCTGCGGGAGGTCTTAGCAGTACTGGAGCGTCACCAATTGTATGCTAACCGCAAGAAGTGCAGTTTTGGGAGCAAAAAGATAGAATACTTGGGGTACATTATAACGGAGGAAGGAGTTTCTGCGGATGGGGAAAAAATAGAAGCTATGGTGGCGTGGCCAGAACCGAGAAACATCAAAGAGTTGCGGGGTTTTTTGGGGTTAACGGGCTACTACAGAAAGTTCGTTAAGGAGTATGGACTGATAGCAAGAGCCCT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

100

Start:

8520714  

End:

8520813

Strand:

+

>A01_LTR-Gypsy_12

ATGCCCCTCTTCTTATACTTCCAGATTTTAATAAAACCTTTGAGATTGAATGTGATGCTTCTGGTATTGGAGTGGGTGTGTTTTGATGCAGGAAAAGAGA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

341

Start:

8736636  

End:

8736976

Strand:

-

>A01_LTR-Gypsy_13

CAGGAATATCCGTCGAAGTACACCACAACAAACTTGCCGATGAATGGTCTGAGGGCCTGATTCATGATGCGCATAAAAGTACTTGGCGCATTGGAGAGGCCGAAGGGCATGACTAACCATTCGAATAGACCTTCTCGAGTTTTGAAGGCTGTCTTCCACTCATCACCTGGTCGAATTCTGATTTGGTGGTAACCGCTTTTCAAGTCAATTTTTGAAAAGACAGTCGCAGAGCCAATCTGGTCGAGCAAGTCGTCGAGTCTGGGGATGGGGAAGCGATATCGAACTGTTATTTTGTTCACAGCTCGACTGTCCACGCACATGCGCCACGTGCCATCTTTCTT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

719

Start:

8738408  

End:

8739126

Strand:

-

>A01_LTR-Gypsy_14

GGCGCCGTTGTTAACTTTTCCTTGATGAGGTTGAACGCCTCTGTCGCTGCCTGTGTCCACTCGAACTTCCCTTCGCGCATGCAGCTTGTAATGGGCGCCATGATGGAGCTAAAGTGGCTCACGAACCTCCTATAAAAGGATGCAAAGCCGTGGAAGCTACGCACTGCAGACACTGTTGTTGGGATTGGCCACGAGCGCACTGCTTCAACTTTGGAGGTATCCATTGCTAGACCTCGAGCTGAGACTACGTATCCTAAGAACAGGACTTCGGAGACACCGAATTCACATTTGTGGCTTGCTGCGAACAGCTTTTCTTGTCGCAGAATCGCCAAGACCTGCCGCAAGTGCACTGCATGTTCAGCCAAGGAAGGACTGAAGATAAGTATGTCGTCGAAGTACACCACAACAAACTTGCCGATGAATGGTCTGAGGGCCTGATTCATGATGCGCATAAAAGTACTTGGCGCATTGGAGAGGCCGAAGGGCATGACTAACCATTCGAATAGACCTTCTCGAGTTTTGAAGGCTGTCTTCCACTCATCACCTGGTCGAATTCTGATTTGGTGGTAACCGCTTTTCAAGTCAATTTTTGAAAAGACAGTCGCAGAGCCAATCTGGTCAAGCAAGTCGTCGAGTCTGGGGATGGGGAAGCGATATCGAACTGTTATTTTGTTCACAGCTCGACTGTCCACGCACATGCGCCACGTGCCATCTTTCTT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

85

Start:

10472102  

End:

10472186

Strand:

-

>A01_LTR-Gypsy_15

CTCTGTTTGCCCATCACTCTGTGGGTGGTAAGCAGTAGACATGTTCAAAGCCACTCCCTGTAGACTGAACAACTCTTTCCAAAAG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

85

Start:

10489404  

End:

10489488

Strand:

-

>A01_LTR-Gypsy_16

CTCTGTTTGCCCATCACTCTGTGGGTGGTAAGCAGTAGACATGTTCAAAGCCACTCCCTGTAGACTGAACAACTCTTTCCAAAAG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

943

Start:

10490426  

End:

10491368

Strand:

-

>A01_LTR-Gypsy_17

CCTCTTGCATCAACACAGCCCCTATTCCCTGACCACAAGCATCAGTTTCAACGACAAAAGGTTTGTCAAATCGTGGCAAAGCCAACACTGGCGCTTCACATAAAGCCTTCTTCAAAGTACCAAAAGCTGTCTCTGCCTCTTCAGACCATTCAAAACAATTTTTCTTCGTTAAAACCGTGAGAGGTCTAGCAATCGTACCAAAGCTCATCACAAATCTTCTATAGTACCCTGCTAAACCCAAAAATCCTCTCAACGCCTTCAGTGTCGATGGGTTCGGCCACTCCACAATGGCTTTAATCTTCTGAGGATCAGTTGAAACCCCCGCTTCTTGTATAAAATGTCCCAAATACTCCACCCTATCAGTAGCAAACGCGCACTTACTATGCTTTGCAAACAACTGATTTCTTCTCATAAGCTCCAATACACTCTGTAAATGAACGACATGTTCCTCCAAAGAAGAGCTGTAAACCAATATATCATCAAAAAATATGAGGACACACTTCCGCAACAGCTCACCAAACACTGTGTTCATTAAGCTCTGGAATGTCGCAGGTGCGTTTGTTAACCCAAACGGCATAACCAGATACTCAAAATGACCGCTGTGAGTTTTGAAGGCTGTCTTGTGGATATCAGATGGATCCATCCTCACCTGATGATATCCTGCCCGCAAATCGATCTTAGAAAACACCTTTGCACCCCCAAGTTCATCCATAAGATCCTCAATTAACGGAATAGGAAAACGATCTTTAACCGTCATACCATTAAGGCCTCTATAATCCACACACAAACGCCAACTCCCATCCTTCTTTTTTACCAACACCACCGGCGAAGCATACGAACTGGAACTGGACTGTATAGTTCCTGCTCCCAATAATTCCTTCACCATCTTATCAATCTCATTCTTTTGATGTACTGCATAACGATAGGGTCGCTGGTTAACCGG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

85

Start:

11180255  

End:

11180339

Strand:

-

>A01_LTR-Gypsy_18

CTCTGTTTGCCCATCACTCTGTGGGTGGTAAGCAGTAGACATGTTCAAAGCCACTCCCTGTAGACTGAACAACTCTTTCCAAAAG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

943

Start:

11181277  

End:

11182219

Strand:

-

>A01_LTR-Gypsy_19

CCTCTTGCATCAACACAGCCCCTATTCCCTGACCACAAGCATCAGTTTCAACGACAAAAGGTTTGTCAAATCGTGGCAAAGCCAACACTGGCGCTTCACATAAAGCCTTCTTCAAAGTACCAAAAGCTGTCTCTGCCTCTTCAGACCATTCAAAACAATTTTTCTTCGTTAAAACCGTGAGAGGTCTAGCAATCGTACCAAAGCTCATCACAAATCTTCTATAGTACCCTGCTAAACCCAAAAATCCTCTCAACGCCTTCAGTGTCGATGGGTTCGGCCACTCCACAATGGCTTTAATCTTCTGAGGATCAGTTGAAACCCCCGCTTCTTGTATAAAATGTCCCAAATACTCCACCCTATCAGTAGCAAACGCGCACTTACTATGCTTTGCAAACAACTGATTTCTTCTCATAAGCTCCAATACACTCTGTAAATGAACGACATGTTCCTCCAAAGAAGAGCTGTAAACCAATATATCATCAAAAAATATGAGGACACACTTCCGCAACAGCTCACCAAACACTGTGTTCATTAAGCTCTGGAATGTCGCAGGTGCGTTTGTTAACCCAAACGGCATAACCAGATACTCAAAATGACCGCTGTGAGTTTTGAAGGCTGTCTTGTGGATATCAGATGGATCCATCCTCACCTGATGATATCCTGCCCGCAAATCGATCTTAGAAAACACCTTTGCACCCCCAAGTTCATCCATAAGATCCTCAATTAACGGAATAGGAAAACGATCTTTAACCGTCATACCATTAAGGCCTCTATAATCCACACACAAACGCCAACTCCCATCCTTCTTTTTTACCAACACCACCGGCGAAGCATACGAACTGGAACTGGACTGTATAGTTCCTGCTCCCAATAATTCCTTCACCATCTTATCAATCTCATTCTTTTGATGTACTGCATAACGATAGGGTCGCTGGTTAACCGG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

345

Start:

11942993  

End:

11943337

Strand:

-

>A01_LTR-Gypsy_20

AAAGATCAAAATATCATCAAAATAAACGACCACAAATTTGCCAATAAAAGAATGCAAAGATTGGTTCATGACGCGCATAAAGGTGCTCAGAGAATTTGACAAACCGAAAGGCATGACAAGCCATTCAAAAAGTCCTTCCCGAGTTTTAAATGTCGTCTTCCACTCATCTCATGGCCTGATTCGTATCTGATGATATCTTCTTCGAAGGTCAAGCTTAGAGAAAATCATTGCAGTGCTTATCTGGTCCAATAGATAATCAAGATGAGGGATGTGAAATCTGTAGCGCACTGTTATCTTATTAATAGCACGACTATCAACACAAATTTTCCACGAGCCATCTTTCTT