ID Class Order Superfamily Length Start End Strand View
scaffold_1_SINE_1 RetrotransposonsSINESINE87025708322571701-
scaffold_1_SINE_2 RetrotransposonsSINESINE58176536607654240-
scaffold_1_SINE_3 RetrotransposonsSINESINE2461034884110349086+
scaffold_1_SINE_4 RetrotransposonsSINESINE9151061690410617818+
scaffold_1_SINE_5 RetrotransposonsSINESINE4911190525511905745+
scaffold_1_SINE_6 RetrotransposonsSINESINE8261266933612670161-
scaffold_1_SINE_7 RetrotransposonsSINESINE8541748402717484880+
scaffold_1_SINE_8 RetrotransposonsSINESINE7462394455123945296-
scaffold_1_SINE_9 RetrotransposonsSINESINE1482395255223952699-
scaffold_1_SINE_10 RetrotransposonsSINESINE9312495466824955598+
scaffold_2_SINE_11 RetrotransposonsSINESINE89128256622826552+
scaffold_2_SINE_12 RetrotransposonsSINESINE90934331283434036+
scaffold_2_SINE_13 RetrotransposonsSINESINE10049843824984481-
scaffold_2_SINE_14 RetrotransposonsSINESINE11276671747667285+
scaffold_2_SINE_15 RetrotransposonsSINESINE13194463819446511-
scaffold_2_SINE_16 RetrotransposonsSINESINE9996758369675934+
scaffold_2_SINE_17 RetrotransposonsSINESINE1271101145311011579+
scaffold_2_SINE_18 RetrotransposonsSINESINE1881418348614183673+
scaffold_2_SINE_19 RetrotransposonsSINESINE6931418568714186379+
scaffold_2_SINE_20 RetrotransposonsSINESINE8631429885714299719+

< 1 2 3 4 5 > Total 6


Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_1

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

870

Start:

2570832  

End:

2571701

Strand:

-

>scaffold_1_SINE_1

AAAGAAAACTATTATTATATTTATCTCCCAAATGGGCTTGGGCCGAATCTACAAAAGTCCAGTCCAGTTACAAAATACGAAATCGACAGTTCACCGGAAAAACAAAAGAAGCTCGCCGTTTGTTGATAGATGCCCGCAGAGCTACCGGAGCCTGAAATCCGGCGGGCTCAAGACCCAGAGTTTTGTGGCTGCAACCGAAGACAGTGAAATTTCGGCGAAAGAGACCGGTTTCCGCCATCAATTTCATGCCTCCGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_2

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

581

Start:

7653660  

End:

7654240

Strand:

-

>scaffold_1_SINE_2

ACATCGGAACGTCGACCGGAGTAAACGAATCCGATCTCGAGCCGAATCCGACGACAAGCCAAACCCGGAACAACTCTCCCGAGATAGATCAACCCAGAGACTGCCGCAACCTTGACTCTCCAATCCCCGACCAAGCAAAAGGAGAGACCAAAAACCTAACCCTCACCACCAACGCCGTCACCAAAACGAACTCATCCAAAAACACACCTAACTTCAGTCTTCAGATCCGGACAAGCAGAAACTTACCTCGGCAGT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_3

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

246

Start:

10348841  

End:

10349086

Strand:

+

>scaffold_1_SINE_3

TCCGGTTAAGTGCTTGTCGTCGTCGGAAGCCCTGTTGCTATGGAGTCGTCCTTGGTAGCGTCAGGTTTGTAGTCTAGATTTCGTGTCTCCTGTGTACCGTCCGGCTAAGATCTCTTTTTCTCCGACAATTTCCGTTTTGGGCTTTGTCTCTTTTGTAACCGTGATTTGTCTGTAACCCAAAAGCCAAAAGCCTATTTGGGTTGATAATATAATTTTAAAATTAAAAAAAAAAAAGAAAAGAAAAGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_4

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

915

Start:

10616904  

End:

10617818

Strand:

+

>scaffold_1_SINE_4

AAAGGACAATCGTTCCTGTAGCAAAACTCTCTCTTCTCTCTCCTTGAAGGCGATTTTTCCTTTTCTTCCGCTTTTAGATCTAGGGTTGTGACTAAAGTGCTTCAACGATGGCCGGCGGTCTTGAAATTTGAGGTGCGGTGGTGAGACAGGTTCTGTCTTCGTCAGTGGTGGTGTGGATTCCTCTCCAACGATCTTGCGGTGGCTCCGGTTGAGCGGTGGCTCCGGTTGAGCGGTGGGTTGATCTGGTGCTGTCGC

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_5

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

491

Start:

11905255  

End:

11905745

Strand:

+

>scaffold_1_SINE_5

TTGAGCCACAGTCTTTCTGAAACCTTGTTTGGTCTTTGCCGGAACGGATTGAAGGTGGAGTCGGCTGGTGAGGAAAACGGTGTCGACGACGATTGGATTTGAGGGTTCGATTAGTAACCTTTTTTCTTGCTAGGTATGGGAGTTAAAGGGTTAGGGAATGGGTGTCTATAAGTCAACGAGTCTGGGAAGGATGTTTTGGGTCTGGTTTACTTCGGCGACGGCTCGGCGACAGGAACCGGTAACTCCGGTCAATGT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_6

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

826

Start:

12669336  

End:

12670161

Strand:

-

>scaffold_1_SINE_6

TTTTTTTTTTTTTTTTTAATATTTAATTTTTATTTCATCCCAAATGGGCTTTTTTTTGGCTTTGGGCCAAAACGAAAACCACGATTACAAAACGTCAAAATTAGCCGGCGACATCACCGGAATCTCAGATCTGCCTTGGACGGTTTAACGGAAACAGTGGATCCCATTTACCATTCCCGGCGTTTACAAGGCTGACTCCTTTGCAGCTACGCCGACGAAACCGAGACTTTTAGCCGGAGTAAACGAATCCGACCG

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_7

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

854

Start:

17484027  

End:

17484880

Strand:

+

>scaffold_1_SINE_7

CTTTCTGTCTCTCGCCGCTTCTCTCTTTTAGATCTAGGGTTCAGTTTGGCTTGGTCTTCACTGCTGGTCGTGGATTTGCAAATCGGAAGCAGAGGTGAGTGCATCTTCTTCTCCGTCAACGGTGTGGGGTGGTTTCTTTCCCGGTTCGATGCTGTTGCGGCTCCTTTTTGGTGGCTGAGAGGATTCGTGGTAGTGGCCTTGATTTGAGGACGCCAGTGGCCCGCCTGATTCTTCTCACGGCTCATCCGACACAAC

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_8

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

746

Start:

23944551  

End:

23945296

Strand:

-

>scaffold_1_SINE_8

TTTTTTTTTTTTTTTTTAAATAGACATCTTTATTATAAAATTCTCCCAAATGGGCCTGAGCCGAACAACAACAAAAGCCAAGACCAGTTACAAAATAGCAAATCGGCGTTTCACCGGAAGAAAAAGAAGCTCGCCGTTTGTTGATAGATGCCCGCAGAGCAACCGGAGCCTGACATCCGGCGGGCTCAAGACCCACAGTTTTGTGGCTACAACCGAAGACCGTGAAATATCGGCGAAAGAGACCGGTTTCCGCCA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_9

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

148

Start:

23952552  

End:

23952699

Strand:

-

>scaffold_1_SINE_9

AGAAACGCCCTGGCTCACTCCTAGACCGCTTTTGAGAAGATTAGACCCAAGATTGAAGAACAAAACAGTAAAGAAACCTAGATCTGAGAACTGAAAATCGTCTTCACGAGAGAGAAATACACGACTTACGAGGCAACGATTGTGCCTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE_10

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

931

Start:

24954668  

End:

24955598

Strand:

+

>scaffold_1_SINE_10

AAAAAAAGGGACAATCGTTCCCATTGAAACCCTCTCTTCTCTCTCCTAAAGCCAGATCTTAGATCTACTTCATCTCCTTTTTTCTTTTTTCGTTTATTGATCTTCAGTGTCGGTTGATGGGTGAGGGAGTGAAGCGGTGGTGAGCGTCTTTCTTCTCCGGTGGTGTGAGGTGTGGTTTGGTCTTTGGCTCATTACTTGTTGGTGGCTCTCCTTCACGGCGGCCAGAGAAGCGGTTCCTTCGTTCTGCTGGTTAAG

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_11

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

891

Start:

2825662  

End:

2826552

Strand:

+

>scaffold_2_SINE_11

AAAGCACAATCGTTGCATTGGGAAGCACACCTTTCTCTCTCACTTGGTAAAGTTTTTCTAGATCTAGGGTTTCGTTTTATTTAGCTTCATCTTCGGCGGCGGATTTGCAAAGGAGGATCAGGGGTGAGCAAGCTCTTTCTCCGACAACGGGGTGTGGTTTCTTCCCCTTTCGAGGTAGTTGTGGCTCCGGTTGGGATGGTTGAGAAGCTCTGGAGCTGTGGCTTTCCGGTTGAGGACGCTGGAAGGTTTGCCTGG

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_12

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

909

Start:

3433128  

End:

3434036

Strand:

+

>scaffold_2_SINE_12

GGACAATCGTTCCCAAGAAAAAAAACTTTTCTCTCTTCTCTCTCTTCCCAAGTAGATCTAGGGTTTCGTCACTTTCAGTTCTTCATCGTTGGGCGGCTGGTTTCAGGAAGAGATACGGTGGTTGACGGCCATTCATCTCCGGCGGTATGAGGCGTGGTAAATCTGGTCTTGTTGCTTCTCGGCGGCCCCTTTCACGTCCTTTCTGAGAAGCTACTACTCCGTATCTTGCGGGTTTGAGGACGCCTGCGAGAGTTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_13

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

100

Start:

4984382  

End:

4984481

Strand:

-

>scaffold_2_SINE_13

TTTTTTTTTTGTAGTTAAAAATATTTTTGTAATCCCATCTGGGATTTGGCTGAAGGCCCAAGAGAATTACACGTTACAACTTAAAGAGGCCCAAATCGGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_14

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

112

Start:

7667174  

End:

7667285

Strand:

+

>scaffold_2_SINE_14

TTCCGATTTGGGTTTCTTTATTTTATAACCCATGTGATTTTGTTGGTCCATTAGCCAAAGAATTCGTTCTGTGATTGAATATTATGAGAAAAAAAAAATTAAATAAAAAAAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_15

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

131

Start:

9446381  

End:

9446511

Strand:

-

>scaffold_2_SINE_15

TCTTTTTTTTTTTTTTGAAACAACCAATCTATTAATCTTCCGAGAAATTGGGTTTTAGCCCATGGGCGTGAACAGTTTACATGGTTACAAAAGGGACGAAGCCCAAATCAGAAATATGCCAGACACAGCGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_16

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

99

Start:

9675836  

End:

9675934

Strand:

+

>scaffold_2_SINE_16

CCTTTTTGTAACTGGATTTCTTCTGTGTTTGGGCCTTAGCCCATGCCCATTAATGGGTTGATTAATAAAATTATATAAAAAAAAAAAAAAAAAAAAAGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_17

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

127

Start:

11011453  

End:

11011579

Strand:

+

>scaffold_2_SINE_17

CCGTTTAACCATTTTTGTAACTGTTTCGATTTTCTGTGTAGGCCTTGGCCCAAGCCCATTTAGGTAGTTGGGTATATTAATATAAGTTATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_18

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

188

Start:

14183486  

End:

14183673

Strand:

+

>scaffold_2_SINE_18

AGAAGCACAATCGTTGCCTTGAAATCCGCGCTTTTCTCTCGCCTTGAAGACGATTTTCTTTTCCTAGATCTAGATCGCAGATCCTTGTAGCGTTTCAATAACCAGCCGAATCTACTCTTGGACGATTCAGGAGAGAGTCGAGGCGTATCTCCGTCAACGGTGGTGTGGCGTTTTCCCTTCGATGTGGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_19

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

693

Start:

14185687  

End:

14186379

Strand:

+

>scaffold_2_SINE_19

GGAGGTGACACGGGTCTGATGGAGGAGGGCTACTGCAGCGGATCTCTCATGGTTGGGACGTCGTGGGTGGCTTCAGTTCCTCCGGCTCAACCGTCAGTCTCAAGTTGCGTTCACGGCGGAAGTTGGGGGGATTAAGGTGGGTTCGTTGTTTGCTCGGTGGTTAGCTGCAGATCCGTAGGATCTTAGAGGGCGGTTGTGGATGTCGGGTGTAAGGGTTTTGGATTTGAGCCACCATCCTTTAGATCCGCCACAACT

Arabidopsis lyrata (v2.1)

ID:

scaffold_2_SINE_20

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

863

Start:

14298857  

End:

14299719

Strand:

+

>scaffold_2_SINE_20

TTTTTTCTTTTTTTTTTTTTAATTTTAACTCTCAAATCTGAAATAAGAAGAAGCGGTGGTGAGCGACTTTCTTCTCCGGTGGTGTGAGGTGTGGTTTGGTCCTTCATTCGATGCTTACGGTGGCTCTCCTTCACGGCAGCTGAGAAACGGTCCATGCGTTCTACTGGTTAAAGGACTCCGGTGGATTGGATCTGGTTTCTCACGGCTCGGCGGCTGATGAGTTGTAGCTCCGGCGGCGGCGGAAGTTGAGTGATG