ID Class Order Superfamily Length Start End Strand View
scaffold_1_SINE-tRNA_1 RetrotransposonsSINESINE-tRNA165416183416347+
scaffold_1_SINE-tRNA_2 RetrotransposonsSINESINE-tRNA152427630427781-
scaffold_1_SINE-tRNA_3 RetrotransposonsSINESINE-tRNA344949174949517-
scaffold_1_SINE-tRNA_4 RetrotransposonsSINESINE-tRNA34614322491432594-
scaffold_1_SINE-tRNA_5 RetrotransposonsSINESINE-tRNA34714606551461001+
scaffold_1_SINE-tRNA_6 RetrotransposonsSINESINE-tRNA17016731371673306-
scaffold_1_SINE-tRNA_7 RetrotransposonsSINESINE-tRNA21419051591905372+
scaffold_1_SINE-tRNA_8 RetrotransposonsSINESINE-tRNA18320259712026153+
scaffold_1_SINE-tRNA_9 RetrotransposonsSINESINE-tRNA15321841542184306+
scaffold_1_SINE-tRNA_10 RetrotransposonsSINESINE-tRNA15223070432307194+
scaffold_1_SINE-tRNA_11 RetrotransposonsSINESINE-tRNA34729145222914868-
scaffold_1_SINE-tRNA_12 RetrotransposonsSINESINE-tRNA17032266153226784+
scaffold_1_SINE-tRNA_13 RetrotransposonsSINESINE-tRNA14932313073231455-
scaffold_1_SINE-tRNA_14 RetrotransposonsSINESINE-tRNA34532573723257716-
scaffold_1_SINE-tRNA_15 RetrotransposonsSINESINE-tRNA12538104063810530-
scaffold_1_SINE-tRNA_16 RetrotransposonsSINESINE-tRNA34740547624055108-
scaffold_1_SINE-tRNA_17 RetrotransposonsSINESINE-tRNA17041129124113081+
scaffold_1_SINE-tRNA_18 RetrotransposonsSINESINE-tRNA28743888614389147-
scaffold_1_SINE-tRNA_19 RetrotransposonsSINESINE-tRNA21444043314404544-
scaffold_1_SINE-tRNA_20 RetrotransposonsSINESINE-tRNA21546225394622753-

< 1 2 3 4 5 > Total 88


Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_1

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

165

Start:

416183  

End:

416347

Strand:

+

>scaffold_1_SINE-tRNA_1

ACCAATTGTCGGTAGCTCAACTGATCAAGATTTTAGGCAAAGTTTAAAGATCATCGATTCGAGTGACGGTTGAAACGTTGAAACGAAACTAATATTGTATGTAGTGTTTTAGACTTGGAGGCATTACGGGTTTTGATCTAAAACAATATTAAAAAAAAAAAAAAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_2

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

152

Start:

427630  

End:

427781

Strand:

-

>scaffold_1_SINE-tRNA_2

TTTTTTTTTTTTTGAATAACCATGGGTCTCCCAAAGGCTTCCTAGGCCCAAGGACTGATGCTGGCAATTTCCCTATGTAAATCTGCCAGTGGCCGTGCCTCCCAAAGGCTTACAGTTGTGACCCCTTTACCACTAGGCCACAAGGCCCGGTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_3

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

344

Start:

949174  

End:

949517

Strand:

-

>scaffold_1_SINE-tRNA_3

CGTCTAGATTTATTATTTATTGCAAATTATGAGAACTGTTACATAGACGATTCTACAACGGACAATTCCTTCCGACCCTTATTAGATCCACGACAGACAACACTTCCTTCTCCATGCTCTTGACGGACACCTTCAATGATCCACGACCTGACGACACTTCTTTCTCTGCGTAGAATCCTGGCGAACGGCTATAATTGTACTTCGCTGGAGATCTCCTGCACACTTACCTTCTTTAATCTGCATATTTATTAATAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_4

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

346

Start:

1432249  

End:

1432594

Strand:

-

>scaffold_1_SINE-tRNA_4

GTCGTCTAGATTTATTATTAATTGCAAATTATGAAAACTGTTACATAGACATTGTACAATTGACAATTCCTTCCGACCCTTACTAGATCGACAACATACTACACTTCCTTCTTCGTGATCTTGATGAATACCTTCAATGATCTATGACCTGACGACACTTCCTTCTCTGCGTAGAATCCTGACGAACGGCTATAATTGTACATCGCTAGAGATCTCTTGCACACTTGCCTCCATTAATCTGCAAATTTGTTAATA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_5

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

347

Start:

1460655  

End:

1461001

Strand:

+

>scaffold_1_SINE-tRNA_5

GTGGAAGCCCCCTTGGCCCATTGGTTGACCAAGGGTTGATTAATGCTTCTACACCAAAAGGTCTGGGGTTCGAGTCCCAGGTATTGCGATTTATTAACAAATTTGCAGATTAATGGAGGAAAGTGTGCAAGAGATCTCCAGCGATGTACAATTATAGCCGTTCGCCAGGATTCTACGCAGAGAAAGAAGTATCGCCAGGTCGTGGATCATTGAAGGTATTCATCAAAATTACGAAGAAGGAAGTGTAGTCTGTCG

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_6

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

170

Start:

1673137  

End:

1673306

Strand:

-

>scaffold_1_SINE-tRNA_6

TTTTTTTTTTTTTGAATAACCGCGGGTCTCTCAAAGGCTTCCTAGGCCCAATGACTAATCCCACGAAGCTGGCAATTCCCCTATGTAAACCTGCCAGTGGCCGTGCCTCGAACCCTAGTGGCGGAAGTCACAGCTGTGACCCCTTTACCACTAGGCCACAAGGCCCGGTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_7

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

214

Start:

1905159  

End:

1905372

Strand:

+

>scaffold_1_SINE-tRNA_7

ACCGGGTGCTTGTCTCTTGGTGGTAAAGGAACCTCGGCTGAGGCACCCGCTACCCGGCTTCGAGTCCCGGCCACTGCGCAATTTACATGCGGGGCGCAGCGTCCCAGACCACCAGTTCCAGGGGGCCCTTAAGTGGAAGCTTAAAAATCTCAAGCACGCGGACTTAGGCCCAGTGGGCTAGTCGGATCACAGTGTGGTCTGGACACTGGGTTAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_8

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

183

Start:

2025971  

End:

2026153

Strand:

+

>scaffold_1_SINE-tRNA_8

GTGGAAGCCATCTTGGCCCATTGGTTGACCAAAGGTTAATTAATGCTTCTACACTAAGAGGTCTGGGGTTCGAGTCCCAGATATTGCGATTTATTAATAAATTTGCAGATTAAAGGAGGCAAGTGTGCAGGAGATCTCCAGCGAAGTACAATTATAGCCGTTCTCTAGGATTCTACGCAGAGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_9

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

153

Start:

2184154  

End:

2184306

Strand:

+

>scaffold_1_SINE-tRNA_9

TGGCCACCTGGCAATTTACCTGCGGACTTGCTTAGGCGCCCCAGACCACCAGTTTATCAGGGGGCCCTTAAGTGGAGGCTTAAAAATCCCTGTGACGCGGGCTTAGGTCCAGTGGGCTAGTCAGATTACTGTGTGGTCTGGATACTGGGTTAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_10

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

152

Start:

2307043  

End:

2307194

Strand:

+

>scaffold_1_SINE-tRNA_10

TGGCCACCTGGGAATTTACATGCGGACTTGCTCAGGCGTCCCAGACCACCAGTTTATCAGGGGCCCTTAAGTGGAGGCTTAAAAATCTCTGTGACGCGGGCTTAGACCCCGTGAGCTAGTTAGATCACTGTGTGGTCTGGATACTGGATTAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_11

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

347

Start:

2914522  

End:

2914868

Strand:

-

>scaffold_1_SINE-tRNA_11

GTCGTCTAGATTTATTATTAATTGTAAATTATGAGAACTGTTACATAGACAATTCTATAACTGACAATTCCTTCCGACCCTTACTAGATTCACGACAGACTACACTTCCTTCTTCGTAATCTTGATGAATACCTTCAATGATCCACGATCTGGCGACACTTCCTTCTCTGCGTAGAATCCTGGCGAACGGCTATAATTGTACATTGCTGGAGATCTCTTGCACACTTGCCTCCATTAATCTGCAAATTTGTTAAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_12

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

170

Start:

3226615  

End:

3226784

Strand:

+

>scaffold_1_SINE-tRNA_12

AACCGGGCCTTGTGGCCTAGTGGTAAAGGGGTCACAGCTGTGACTTCCGCCACCGGGGTTCAAGGCACGGCCACTGCCAGGTTTACATAGAGGAATTGCCAGCCTCGTGGGATTAGTCTTTGGGCCTAGGAAGCCTTTTGGAGACCCGCGGTTATTCAAAAAAAAAAAAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_13

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

149

Start:

3231307  

End:

3231455

Strand:

-

>scaffold_1_SINE-tRNA_13

ATAACACAGTATCCAGATCACACAGTGATTTGACTAGCCCACTGGGCCTAAGCTCACTTCACAGTTTTAAGTCTCCACTTAAGGGCCCCCTGATAAACTGGTGGTCTGGGGTGCCTGAGCAAGTCCGCATGTAAATTCCCAGGTGGCCA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_14

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

345

Start:

3257372  

End:

3257716

Strand:

-

>scaffold_1_SINE-tRNA_14

CGTCTAGATTTATTATTAATTACAAATTATGATAACTGTTATATAGACGATTCTACAACTGACAATTTCTGCCGACCCTTAGTAGATCCACGACAAAATACACTTCTTTCTTCATAATTTTGATGAATACCTTCAATGATCCACGACCTGGCGACACTTCCTTCTCTGCGTAGAATCCTGGCGCACGACTATAATTGTACATCGCTGGAGATCTTCTGCACACTTGCCTCCATTAATCTGCAAATTTGATAATAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_15

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

125

Start:

3810406  

End:

3810530

Strand:

-

>scaffold_1_SINE-tRNA_15

AATAACCGCGGGTCTCTCCAAGGTTTCCTAGGTCCAAGGACTAATCCCACGAAGCTGGCAATTCTCCTATGTAAACCTACCAATGGCCGTGCCTCGAACCCTTGTGGCGAAAGTCACAGCTGTGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_16

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

347

Start:

4054762  

End:

4055108

Strand:

-

>scaffold_1_SINE-tRNA_16

GTCGTCTAAATTTATTATTAATTGCAAATTATGAGAACTGTTACATAGACGATTCTACAACTGACAATTTTTTCCGACCTTTACTAGATCCACGACAGACTACACTTCTTTCTTCGTGATCTTGATGAATACCTTCAATGATCCACGACCTGGCGACACTTTCTTCTCTGTGTAGAATCCTGGCGAACGGCTATAATTGTACATCGCTGGAGATCTCTTGCACACTTGCCTCCATTAATCTGCAAATTTGTTAAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_17

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

170

Start:

4112912  

End:

4113081

Strand:

+

>scaffold_1_SINE-tRNA_17

AACCGGGCCTTGTGGCCTAGTGGTAAAGGGGTCACAGCTGTGACTTCCGCCACCAGGGTTCAAGCTACGGTTACTGGCAGGTTTACATAGGGGAATTGCCAGTCTCGTGGGATTAGTCATTGGGTCTAGGAAGCCTTTGAGAAACCCGCGGTTATTCAAAAAAAAAAAAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_18

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

287

Start:

4388861  

End:

4389147

Strand:

-

>scaffold_1_SINE-tRNA_18

ACTGACAATTCCTTCCGACTCTTACTAGATCCACGACAGACTACACTTCCTTCTTCGTAATCTTGATGAATACCTTCAATGATCTACGACCTAGCGACACTTTCTTCTCTTCGTAGAATCCTGGCGAACAACTATAATTGTACATCGCTGGAGATCTCTTGCACACTTGCCTCCATTAATCTGCAAATTTGTTAATAAATCGCAATACCTGGAACTCGAACCCTAGACCTCTTAGTGTAGAAGCATTAATCAACC

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_19

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

214

Start:

4404331  

End:

4404544

Strand:

-

>scaffold_1_SINE-tRNA_19

ATAATCCAGTGTCCAGACCACACAGTGATCCGACTAGCTCACTGGGCTTTAGCCCGCGCTCTGAGATTTTTAAGCCTCCACTTAAGGGCCCCCTGGAACTGGTGGTCTGGGACGCTGCGCCCCGCATGTAAATTGCGCAGTGGCCGGGACTCGAAGCCGGGTGGCGGGTGCCTCAGCCGAGGTTCCAATACCACTAGGAGACAAGCACCCGGTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_SINE-tRNA_20

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

215

Start:

4622539  

End:

4622753

Strand:

-

>scaffold_1_SINE-tRNA_20

ATAACCCAGTGTCCAGACCACACTGTGATCCGACTAGCTCACTGGGCCTAAGCCCGCGTGCCTGGGATTTTGAAGCCTCCACTTAAGGGCCCCCTGGAACTGGTAGTTTGGGACGCTGCGCCCCGCAGGTAAATTGTGCAGTGGCCGGGACTCGAAGCCGGGTGGCGGGTGCCTCAGCCGAAGTTCCTTTACCACCAGGAGACAAGCACCCGGTT